Question: How To Download All Ncbi Gtex Eqtl Data
1
gravatar for Dr.Bunsen
6.9 years ago by
Dr.Bunsen140
Dr.Bunsen140 wrote:

Does anyone know how to download all the NCBI GTeX eQTLs? From the browser it is trivial to search for eQTLs from a list of SNPs or other criteria, but I can't figure out how to actually download/access ALL the data. Thanks for the help!

ncbi • 3.9k views
ADD COMMENTlink written 6.9 years ago by Dr.Bunsen140
2
gravatar for David Quigley
6.9 years ago by
David Quigley11k
San Francisco
David Quigley11k wrote:
  1. Select an experiment. Don't specify any other parameters (RS numbers, etc).
  2. Click Download Text.
ADD COMMENTlink written 6.9 years ago by David Quigley11k

Thanks, yes I discovered this option too. The problem is that there are around one hundred experiments, so I was hoping to avoid doing this manually. By experiments I'm assuming you mean "phenotypic traits"?

ADD REPLYlink written 6.9 years ago by Dr.Bunsen140

Odd; I only see 7 distinct analysis IDs with four distinct pubmed IDs between them. What am I missing?

ADD REPLYlink written 6.9 years ago by David Quigley11k

Thanks David! Sorry for the confusion, I see what you mean now.

ADD REPLYlink written 6.9 years ago by Dr.Bunsen140
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