Question

How To Download All Ncbi Gtex Eqtl Data

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12.4 years ago

Dr.Bunsen ▴ 150

Does anyone know how to download all the NCBI GTeX eQTLs? From the browser it is trivial to search for eQTLs from a list of SNPs or other criteria, but I can't figure out how to actually download/access ALL the data. Thanks for the help!

ncbi • 6.2k views

ADD COMMENT • link updated 12.4 years ago by David Quigley 11k • written 12.4 years ago by Dr.Bunsen ▴ 150

score 2 · Answer 1 · 2011-11-15

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12.4 years ago

David Quigley 11k

Select an experiment. Don't specify any other parameters (RS numbers, etc).
Click Download Text.

ADD COMMENT • link 12.4 years ago by David Quigley 11k

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Thanks, yes I discovered this option too. The problem is that there are around one hundred experiments, so I was hoping to avoid doing this manually. By experiments I'm assuming you mean "phenotypic traits"?

ADD REPLY • link 12.4 years ago by Dr.Bunsen ▴ 150

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Odd; I only see 7 distinct analysis IDs with four distinct pubmed IDs between them. What am I missing?

ADD REPLY • link 12.4 years ago by David Quigley 11k

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Thanks David! Sorry for the confusion, I see what you mean now.

ADD REPLY • link 12.4 years ago by Dr.Bunsen ▴ 150