Question: filter BreakDancer output
0
gravatar for biostud
2.3 years ago by
biostud0
Sweden
biostud0 wrote:

I’m using BreakDancer Max (v 1.1.2) to identify structural variants in multiple dog samples (WGS of blood cells) that have cancer. Does anyone have suggestions for optimal filtering? Currently as a threshold for selecting deletions, I’m using 1) a confidence score greater than or equal to 90 and 2) the median of total supporting reads across the entire sample output. Wondering if there's another approach people have used in their past analyses. 

 

ADD COMMENTlink written 2.3 years ago by biostud0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1211 users visited in the last hour