Question: How can i retrieve all cds from a ensembl genetree?
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gravatar for yumchao
4.8 years ago by
yumchao0
yumchao0 wrote:

I have download a genetree from ensembl. The sequence in the fasta is amino acid. And each seq have an ensembl ID, all i want to do is to find the cds of each seq. but there is so many sequeces in the file. how can i download them easily? what kind of tools can i use? the tutor told me that biomaRt maybe work. but it didn't.

gene tree ensembl • 1.4k views
ADD COMMENTlink modified 4.8 years ago by Emily_Ensembl20k • written 4.8 years ago by yumchao0

You can download the Ensembl CDS from the Ensembl ftp site (http://www.ensembl.org/info/data/ftp/index.html)

ADD REPLYlink written 4.8 years ago by mark.ziemann1.2k
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