Question: Strucutral Variant analysis in WES
gravatar for correia.mirandacristina
3.5 years ago by
United States

I am looking at Structural Variant analysis with WES data. Is qSV compatible with WES or just WGS?  other suggestions? Thanks


next-gen genome • 1.1k views
ADD COMMENTlink modified 3.5 years ago by Ying W3.9k • written 3.5 years ago by correia.mirandacristina0
gravatar for Ying W
3.5 years ago by
Ying W3.9k
South San Francisco, CA
Ying W3.9k wrote:

Due to the exome selection step, structural variant analysis is probably not possible for WES unless you are lucky enough to catch a breakpoint within exon (you can tell if one pair mapped in exon but other pair mapped far away)

ADD COMMENTlink written 3.5 years ago by Ying W3.9k
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