Question: Strucutral Variant analysis in WES
0
gravatar for correia.mirandacristina
3.3 years ago by
United States

I am looking at Structural Variant analysis with WES data. Is qSV compatible with WES or just WGS?  other suggestions? Thanks

Cristina

next-gen genome • 1.1k views
ADD COMMENTlink modified 3.3 years ago by Ying W3.8k • written 3.3 years ago by correia.mirandacristina0
0
gravatar for Ying W
3.3 years ago by
Ying W3.8k
South San Francisco, CA
Ying W3.8k wrote:

Due to the exome selection step, structural variant analysis is probably not possible for WES unless you are lucky enough to catch a breakpoint within exon (you can tell if one pair mapped in exon but other pair mapped far away)

ADD COMMENTlink written 3.3 years ago by Ying W3.8k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 710 users visited in the last hour