Question: GFF problem - gtf_to_fasta (Tophat) outputs only 2 sequences from 70 entries in GFF?
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gravatar for manekineko
4.7 years ago by
manekineko130
Bulgaria
manekineko130 wrote:

Hi,

I have a GFF that made and validate via Online GFF validator, double and triple check it, but from 70 entries gtf_to_fasta (Tophat) outputs only 2 sequences,

Also When I want to Make GFF to GTF the gtfread (Cufflinks) also outputs only 2 entries in the GTF file?! So cannot see where is the problem with my GFF?

rna-seq gff tophat gtf • 1.7k views
ADD COMMENTlink modified 4.7 years ago • written 4.7 years ago by manekineko130
0
gravatar for manekineko
4.7 years ago by
manekineko130
Bulgaria
manekineko130 wrote:

Is there a specific requirements for the GFF that tophat needs? I just have putative regions (e.g. chromosome start stop strand name)?

ADD COMMENTlink written 4.7 years ago by manekineko130
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