Question: Retrieving genomic coordinates of Transcriptional factor binding sites
gravatar for camelbbs
4.5 years ago by
camelbbs660 wrote:

Recently I am using the JASPAR to generate the transcriptional factor (TF) bindin sites of human. I want to ask how I can get the genomic coordinates of all potential TF binding sites. I checked the download folders "sites" and "bed_files". I see the folder "sites" only contains the information like 

>MA0001    AGL3    1


And the folder "bed_files" contains the information of genomic coordinates, but only limit to unknown TF in "sites". I cannot find the downloadable tools that I can run in local. 

Can anyone solve this problem or recommend some other databases which contains the coordinates information.

Thanks all.

transcriptional factor gene • 1.2k views
ADD COMMENTlink modified 4.5 years ago • written 4.5 years ago by camelbbs660
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1080 users visited in the last hour