Question: Retrieving genomic coordinates of Transcriptional factor binding sites
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gravatar for camelbbs
3.8 years ago by
camelbbs650
China
camelbbs650 wrote:

Recently I am using the JASPAR to generate the transcriptional factor (TF) bindin sites of human. I want to ask how I can get the genomic coordinates of all potential TF binding sites. I checked the download folders "sites" and "bed_files". I see the folder "sites" only contains the information like 

>MA0001    AGL3    1

acaaCCATATATAGtagccactgaat

And the folder "bed_files" contains the information of genomic coordinates, but only limit to unknown TF in "sites". I cannot find the downloadable tools that I can run in local. 

Can anyone solve this problem or recommend some other databases which contains the coordinates information.

Thanks all.

transcriptional factor gene • 1.1k views
ADD COMMENTlink modified 3.8 years ago • written 3.8 years ago by camelbbs650
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