Retrieving genomic coordinates of Transcriptional factor binding sites
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8.8 years ago
camelbbs ▴ 710

Recently I am using the JASPAR to generate the transcriptional factor (TF) binding sites of human. I want to ask how I can get the genomic coordinates of all potential TF binding sites. I checked the download folders "sites" and "bed_files". I see the folder "sites" only contains the information like

>MA0001    AGL3    1
acaaCCATATATAGtagccactgaat

And the folder "bed_files" contains the information of genomic coordinates, but only limit to unknown TF in "sites". I cannot find the downloadable tools that I can run in local.

Can anyone solve this problem or recommend some other databases which contains the coordinates information.

Thanks all

transcriptional-factor gene • 1.8k views
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