Question: Importing Kraken to MEGAN5
1
gravatar for jeremy.cox.2
4.4 years ago by
jeremy.cox.290
United States
jeremy.cox.290 wrote:

Hello All,

I wrote quick convertor program to Kraken output to simulated blastTAB format, so MEGAN 5 can import it.  (link)

This creates a four column (not 12 column) .blast file with the first two columns of interest correctly filled in.

This requires using the file my convertor generates with the synonym map feature.

 

I built a taxonomic tree this way, but Options --> Compute Taxonomic Profile option is not available.

 

Does anyone have insight into why this option is missing?

 

megan megan5 blast kraken next-gen • 1.5k views
ADD COMMENTlink modified 3.7 years ago by cecilia.b260 • written 4.4 years ago by jeremy.cox.290
0
gravatar for cecilia.b26
3.7 years ago by
cecilia.b260 wrote:

Hi Jeremy,

Would you mind sharing your convertor program? It is a great idea!

ADD COMMENTlink written 3.7 years ago by cecilia.b260
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