I am doing de novo transcriptome annotation. I have finished blasting against the nr database and imported all the results to blast2go. I'm trying to start interproscan in blast2go but it is very slow. At this rate, the interproscan is going to take me another month (blast against nr has already taken me 1 month).
So I'm wondering what else interproscan adds to my transcriptome annotation. Can I skip this step and map the GO directly?