Off topic:abyss-3.sam.gz (GALAXY ERROR RUNNING COMMAND)
1
0
Entering edit mode
8.8 years ago
minh.le67 • 0

Galaxy abyss-pe wrappers.

/home/shed_tools/__/repos/edward-kirton/abyss_toolsuite/__/abyss_toolsuite/abyss/

[abyss-pe_wrapper.pl]
# GET ARGS
my $kmer_size=shift @ARGV;
my $min_num_pairs=shift @ARGV;
my $outdir=shift @ARGV;
my $outfile=shift @ARGV;
my $contigs_outfile=shift @ARGV;
my $sam_outfile=shift @ARGV;
my $hist_outfile=shift @ARGV;

Galaxy Abyss paired-end
ERROR RUNNING COMMAND: gunzip /home/galaxy/databasejob_working_directory/000/76/dataset_137_files/abyss-3.sam.gz

No such file

?? I'm not sure why the err msg is generated?

Thanks so much for your help. Have a pleasant day.

abyss galaxy abyss-pe • 1.4k views
ADD COMMENT
This thread is not open. No new answers may be added
Traffic: 2557 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6