Entering edit mode
8.8 years ago
minh.le67
•
0
Galaxy abyss-pe wrappers.
/home/shed_tools/__/repos/edward-kirton/abyss_toolsuite/__/abyss_toolsuite/abyss/
[abyss-pe_wrapper.pl]
# GET ARGS
my $kmer_size=shift @ARGV;
my $min_num_pairs=shift @ARGV;
my $outdir=shift @ARGV;
my $outfile=shift @ARGV;
my $contigs_outfile=shift @ARGV;
my $sam_outfile=shift @ARGV;
my $hist_outfile=shift @ARGV;
Galaxy Abyss paired-end
ERROR RUNNING COMMAND: gunzip /home/galaxy/databasejob_working_directory/000/76/dataset_137_files/abyss-3.sam.gz
No such file
?? I'm not sure why the err msg is generated?
Thanks so much for your help. Have a pleasant day.