Question: Parsing Hmmsearch tblout format
0
gravatar for aproposdiver
5.5 years ago by
aproposdiver10
aproposdiver10 wrote:

I have a tblout format for search of sequences against all Pfams.  I would like to find the HMM that each of my sequences matches best which means I want to get the sequence that has the lowest evalue for one Hmm model.  I wonder if anyone know of a way to do this?  I basically want to be able to sort the query sequences and grab the lowest evalue for each one.

Any input would be helpful

 

Thanks

hmmsearch • 1.8k views
ADD COMMENTlink written 5.5 years ago by aproposdiver10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1565 users visited in the last hour
_