Parsing Hmmsearch tblout format
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5.7 years ago
aproposdiver ▴ 10

I have a tblout format for search of sequences against all Pfams.  I would like to find the HMM that each of my sequences matches best which means I want to get the sequence that has the lowest evalue for one Hmm model.  I wonder if anyone know of a way to do this?  I basically want to be able to sort the query sequences and grab the lowest evalue for each one.

Any input would be helpful

 

Thanks

hmmsearch • 1.9k views
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