phylogenetic analysis: 2.5 millions SNPs in 33 samples?
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5.9 years ago
sun.nation ▴ 120

I have huge SNP data set from 33 samples. Any suggestion of software to do phylogenetic tree analysis. I tried MEGA6 and it crashed several times. Thanks

phylogenetic SNP • 1.3k views
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5.9 years ago
SNPsaurus ▴ 50

How about RAxML? http://sco.h-its.org/exelixis/software.html

It has handled much larger populations on a small server, so may work for your needs.

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