Question: Analysing illumina micro array
0
rohit • 30 wrote:
Hello everyone,
I am tasked with analysing the gene expressions from illumina microarray. I've downloaded illumina raw data and non- normalized data from GEO having accession number GSE31738. In the raw data folder I couldn't find any text file having Average signal, BEAD_STDERR and Average NBEADS but in non-normalized file I found detection and P values. Is it possible to get the expression values with detection and P values?
I have analysed with GEO2R but I found that some sample values are like 2450.2, 2785, 4056 etc.
Below table is from the non- normalized data file.
Can anyone please help me in analysing this illumine microarray/
Thanking You in advance
<caption>non normalized data</caption>| ID_REF | MSC_1Detection | Pval | MSC_2Detection | Pval | MSC_3Detection | Pval | |||||
| ILMN_2735294 | 130.6 | 0.81659 | 149.5 | 0.94216 | 137.8 | 0.87029 | |||||
| ILMN_2417611 | 101.6 | 0.08734 | 105.6 | 0.12013 | 112.6 | 0.34701 | |||||
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1.000 |
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1.000 |
|
1.00000 | |||||
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|
1.000 |
|
1.000 |
|
1.000 |
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modified 4.1 years ago
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andrew.j.skelton73 ♦ 5.8k
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written
4.1 years ago by
rohit • 30
