I am trying to do Evolutionary Placement Algorithm with RAxmL and i want to perform bootstraping.
I first build a reference tree using ./raxmlHPC –f a –x 12345 –p 12345 -# 100 –m GTRGAMMA –s sequences.phy –n file_name –o outgroupName –w output_directory
then i use the bipartitions file to perform
./raxmlHPC -f v -m GTRGAMMA -s sequences(from the tree + query sequences).phy -t ibipartition_file –w output.directory -n Placement
Then I open the labelledTree with Dendroscope but I can only see node labels and no bootstrap values. Can anyone help me please?