Question: raxmL EPA bootstrap
0
gravatar for carvin900
4.4 years ago by
carvin9000
Canada
carvin9000 wrote:

Hi,

 

I am trying to do Evolutionary Placement Algorithm with RAxmL  and i want to perform bootstraping.

I first build a reference tree using ./raxmlHPC –f a –x 12345 –p 12345 -# 100 –m GTRGAMMA –s sequences.phy –n file_name –o outgroupName –w output_directory

then i use the bipartitions file to perform 

./raxmlHPC -f v -m GTRGAMMA -s sequences(from the tree + query sequences).phy -t ibipartition_file –w output.directory -n Placement

Then I open the labelledTree with Dendroscope but I can only see node labels and no bootstrap values. Can anyone help me please?

ADD COMMENTlink written 4.4 years ago by carvin9000
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