Question: Aracne in Geworkbench
gravatar for nazaninhoseinkhan
4.8 years ago by
Iran, Islamic Republic Of
nazaninhoseinkhan400 wrote:

Dear all,

I am trying to run aracne in geworkbench 2.5.1.

It successfully run on some normalized gene expression data belong to cancer patients.

However when I try to run it on normalized gene expression data of normal tissue, I get the error message that "the aracne run resulted in no adjacent genes, consider relaxing your thresholds". I have tried different thresholds but only when I choose p-value=1, I can get some results.

Can any one give me any explanation about this problem and the probable reasons?

Thank you in advance

ADD COMMENTlink written 4.8 years ago by nazaninhoseinkhan400
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1174 users visited in the last hour