comparing protein networks over time
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8.8 years ago
Abhi ★ 1.6k

Hey Guys

I have constructed two separate protein interaction networks each denotes a time point of the assay at 2hours and 24 hours. Just wondering what tools and techniques I can use them to compare these networks both for biological and visual interpretation.

Thanks!

-Abhi

ppi network protein • 1.6k views
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8.8 years ago

To look at evolution of protein modules over time, I use a tensor factorization approach. See this paper to get an idea. I also use the DynNetwork plugin to cytoscape.

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