How to describe this figure
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7.3 years ago
cfarmeri ▴ 210

Hi

I would like to describe following figure that can compare between some TFs and Histon modifications enrichment on genome.

How do I get this figure? Furthermore, I would be glad if you tell me what name of this figure is.

Thanks!

http://www.factorbook.org/mediawiki/factordata/FactorBook_Heatmaps/Histone_Modification_Markers/A549_YY1_HAIB.png

ChIP-Seq • 2.8k views
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7.3 years ago
John 13k

This is a simple occupancy heatmap - Deeptools does a wonderful job at plotting these, and isn't as painful to use as other implementations.

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Thanks!

Deeptools seems useful to visualise.

The wiki page has polite descriptions.

I would like to try this.

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You're very welcome - but full disclosure: I have not contributed a single line of code to this project!! If you find it useful you should thank the people who made it :)

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here you can find multiple heatmaps created using deepTools like the one in your example:

http://deeptools.readthedocs.org/en/latest/content/tools/plotHeatmap.html

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7.3 years ago
ivivek_ngs ★ 5.2k

You can use deeptools for the purpose which is really a great resource or you can also use HOMER which is also a suite of tools

http://homer.salk.edu/homer/chipseq/heatmap.html

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The HOMER also has other useful tools to NGS analysis.
Thank you for your advice!

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