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• 3' Utrs
  Hi all, is there any software for annotation the nonsynonymous variants located in 3' UTRS ? ...
• How to find the longest annotated 3' UTR in human or mouse genomes?
  I would like to find out what are the longest know 3' UTRs in human and mouse genomes. This shoul...
• 3 Utrs Annotation
  Hi all, is there any software for annotation variants located in 3' UTRS ? How can I check if a ...
• How to use dbSNP database?
  I want to collect missense SNPs, nonsense SNPs, SNPs in the 5' UTR and SNPs in the 3'UTR region f...
• How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
  Hi all, I want to extract the genomic region of 3'UTR and 5'UTR from the GENCODE gtf annotation ...
• 5"UTR and 3"UTR of Nile Tilapia Genome (Oreochromis niloticus)
  Dear all, I am looking for the annotations of 5'UTR and 3'UTR of the tilapia genome. I went to U...
• Where to get human 3'-UTR multiple sequence alignment ?
  Hi all,   I want to get human 3'-UTR multiple sequence alignment across different species. I w...
• High percentage of UTR mutations in RNAseq
  I noticed a high percentage of 3'UTR mutations human tumor RNAseq. Here is a [paper][1] (Fig.3) ...
• Extract 3'utr from annotation file
  hello i am looking to extract the 3'utr sequences of fathead minnow fish using the annotation fi...
• Retrieve genomic physical coordinates of 3'UTR for set of genes
  Hello, I have a list of human genes and I'd like to retrieve the physical coordinates (GRCh37/hg1...
• How to get starting and ending positions of 5'UTRs and 3'UTRs?
  Hi everyone! I have a gff file with genome annotations downloaded from NCBI (http://www.ncbi.nlm...
• How to get a annotation from ucsc table browser which include intron, exon and 5'/3' UTR ?
  Dear all, I would like to get an annotation file (which is in gtf or bed format) for a list of ge...
• The Utr Sequence Used To Predicted Mirna Target
  Dear all,I am a freshman in bioinformatics and I am trying to deal with some miRNA data.I have s...
• Homology of 3' UTRs
  I am looking to identify the mouse homologs of human UTRs and measure the sequence conservation b...
• Intron finder for 3' UTR sequences (non-model organism)?
  I am trying to find introns retained in 3' UTR sequences. I have FASTA files for both the entire ...
• 3' UTRs GTF file
  Hello, I have aligned RNAseq data to reference genome and now I have a .bam file. I want to chec...
• Non Exonic Snp (Intronic ,Utr 3 , Utr 5 ,Intergenic) Effect Prediction
  hi everyone I'm dealing with some sequenced genome , my purpose is to design a pipeline to annot...