Question: CIRCOS plot with Chip-Seq Data
2
gravatar for user230613
4.0 years ago by
user230613280
Europe
user230613280 wrote:

Hi all,
I've just finished a chip-seq analysis and I would like to represent the results in a nice way. I was thinking about doing a CIRCOS plot with the peaks detected. I've never work with CIRCOS, and it's my first time with chip-seq data, so I would like to know if anyone have tried to perform a circos with this kind of data, and how the plot looks like. I've read the circos manual from http://circos.ca/documentation/tutorials/, to have a general idea but I would like to focus on chip-seq data. Any help or plot examples would be really appreciated.
I'm planing to use circlize R package.

circos chip-seq • 2.3k views
ADD COMMENTlink modified 13 months ago by Andrewoods90 • written 4.0 years ago by user230613280
0
gravatar for anu014
3.1 years ago by
anu014170
India
anu014170 wrote:

HOMER can also do CIRCOS plot for chip-seq. But it seems it can work only upon Paired-end data. Check it out here : http://homer.salk.edu/homer/interactions/circos.html

ADD COMMENTlink written 3.1 years ago by anu014170
0
gravatar for Andrewoods
13 months ago by
Andrewoods90
Andrewoods90 wrote:

Maybe you want to try shinyCircos. It's an interactive APP. https://github.com/venyao/shinyCircos http://shinycircos.ncpgr.cn/

ADD COMMENTlink written 13 months ago by Andrewoods90
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