How To Convert Bam To Ped/Map File
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9.9 years ago
Anjali ▴ 60

Can anyone suggest me how to convert a BAM allignment file to a PED and a MAP file format??

Thank you

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Your previous thread asked the same question.

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9.9 years ago

BAM is an alignment format and does not describe genotypes. You will need to call genotypes on your samples using a tool such as samtools mpileup. The output from that will be VCF format. From the answer to your other related question,

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