I have been using cn.mops to call CNVs, and I have been using a useful function 'segplot' which makes a nice graph of the log ratio of the read counts (y-axis) vs the genomic position on the x-axis. An example is given in the documentation http://bioconductor.org/packages/release/bioc/vignettes/cn.mops/inst/doc/cn.mops.pdf
Is it possible to extract the information which goes into this graph from cn.mops and save it to a csv file for instance, so I can plot elsewhere? I have been unable to find the data associated with this graph in the cn.mops results. Thanks.