Question: How to get log ratio from cn.mops segplot function
gravatar for kezcleal
4.0 years ago by
United Kingdom
kezcleal130 wrote:

I have been using cn.mops to call CNVs, and I have been using a useful function 'segplot' which makes a nice graph of the log ratio of the read counts (y-axis) vs the genomic position on the x-axis. An example is given in the documentation

Is it possible to extract the information which goes into this graph from cn.mops and save it to a csv file for instance, so I can plot elsewhere? I have been unable to find the data associated with this graph in the cn.mops results. Thanks.

next-gen R • 1.3k views
ADD COMMENTlink modified 3.9 years ago by Biostar ♦♦ 20 • written 4.0 years ago by kezcleal130

Same question.  Is there anybody that know how to get the data out of R and into a tab-delimited text file?

ADD REPLYlink written 3.7 years ago by peterpath0
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