Question: How to get log ratio from cn.mops segplot function
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gravatar for kezcleal
3.6 years ago by
kezcleal130
United Kingdom
kezcleal130 wrote:

I have been using cn.mops to call CNVs, and I have been using a useful function 'segplot' which makes a nice graph of the log ratio of the read counts (y-axis) vs the genomic position on the x-axis. An example is given in the documentation http://bioconductor.org/packages/release/bioc/vignettes/cn.mops/inst/doc/cn.mops.pdf

Is it possible to extract the information which goes into this graph from cn.mops and save it to a csv file for instance, so I can plot elsewhere? I have been unable to find the data associated with this graph in the cn.mops results. Thanks.

next-gen R • 1.2k views
ADD COMMENTlink modified 3.6 years ago by Biostar ♦♦ 20 • written 3.6 years ago by kezcleal130

Same question.  Is there anybody that know how to get the data out of R and into a tab-delimited text file?

ADD REPLYlink written 3.4 years ago by peterpath0
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