Question: Distance Between Peaks in Macs Peak-calling data
0
gravatar for saamar.rajput
4.3 years ago by
Germany
saamar.rajput50 wrote:

I have run Macs Peak-calling for different time points on yeast data sets. Now I want to know the distance between the neighboring peaks in a file for each time point ( There are a number of peaks in each file and I want to know the distance between each neighboring peak). Using some tool in Linux or maybe R.

chip-seq • 1.2k views
ADD COMMENTlink modified 4.3 years ago by Alternative240 • written 4.3 years ago by saamar.rajput50
1
gravatar for Alternative
4.3 years ago by
Alternative240
Alternative240 wrote:

Bedtools should do the job for you: http://bedtools.readthedocs.org/en/latest/

Check for "bedtools spacing" or "bedtools closest with -d and -io options".

ADD COMMENTlink written 4.3 years ago by Alternative240
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1044 users visited in the last hour