Finding public ChIP-seq data for various tissue types
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8.5 years ago
LauferVA 4.2k

I would like to learn how better to locate publically available ChIP-seq data.

Specifically, I would like to look for H3K27me3, Ezh2, and Eed ChIP-seq data from brain tissue (amygdala and dorsal raphe) if such exist.

However, if not, I am still very interested in learning more about the most widely used ChIP-seq portals that may provide downloadable data.

Thanks!

ChIP-Seq • 2.0k views
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Roadmap Epigenomics, ENCODE.

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8.5 years ago

ftp://ftp.genboree.org/EpigenomeAtlas/ is the roadmap epigenomics ftp and has K27 at least. Browsing is much slower than dl-ing.

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