I am working on a transcriptomics experiment. It is for a bacterial genome, that has no .rnt or .ptt file made for it. EDGE-pro which I'm using, requires both of those files. I realized that I could convert a .gbk file to a .ptt file.
Is there a tool to create .rnt files (from .gbk maybe?), or some ingenious script to extract the information from a .gbk file.
As I understand, .ptt are protein table files and .rnt is non-coding RNA table files.
Hope you can help!