I am looking for a script which can extract the Illumina Omniexpress genotype data from the high quality denisovan genome vcf file. http://cdna.eva.mpg.de/denisova/VCF/.
Here is a very similar post to your question: Extracting Genotype Information From Vcf
Also, here's a list of various tools you can use to parse through VCF files to help get the information you need: https://kromozome.wordpress.com/2014/09/09/vcftools/
I hope this helps.
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