Question: Quantitative trait Association analysis of Animal genetic data
0
gravatar for deepue
3.7 years ago by
deepue110
Finland
deepue110 wrote:

Hello,

I have phenotype(pheno.txt) and genotype( data.map, data.ped) data of Shoebill. I would like to see if any marker is associated with the phenotype beak length. Also, to identify how much phenotype variance is being explained by the top markers. I have issues in using PLINK as it is not allowing the chromosomes numbers greater than 24. How to achieve this ? Is there any other program which can help in doing ?

Thanks.

snp association animal • 1.1k views
ADD COMMENTlink modified 3.7 years ago • written 3.7 years ago by deepue110

You have to use --autosome-num flag followed by the chromosome number. Example --autosome-num 32

ADD REPLYlink written 3.0 years ago by akang90
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 832 users visited in the last hour