really appreciate if anyone can help with this.
I have XLOC gene names in my cuffdiff output (despite always using annotation in previous steps) and I have been trying to convert to gene names to allow intrepretation, using the solution as posted in http://seqanswers.com/forums/showthr...light=getGenes with getGenes() function
However I keep getting the following error
> cuff <- readCufflinks('diff_out1/')
> diffGeneIDs <- getSig(cuff,level="genes",alpha=0.05)
> diffGenes <- getGenes(cuff,diffGeneIDs)
Error in as.character.default(unlist(x)) :
no method for coercing this S4 class to a vector
Hopefully it is a simple solution but Id really appreciate some help as I have ground to a halt!