Question: How can I download from the 1000 genome information for a list of SNPs in specific populations?
1
gravatar for Simo
3.5 years ago by
Simo30
Italy
Simo30 wrote:

Hi All,

I have a list of rs codes and positions from a Microarray and I need to get the same positions in different populations from the 1000 genome.

I tried with the 1000 genome Browser, but I should give a range for each chromosome and they are too big.

How can I do it in a different way?

Thank you

1000genome microarray snps • 1.2k views
ADD COMMENTlink modified 3.2 years ago by jimmy_zeng90 • written 3.5 years ago by Simo30
0
gravatar for jimmy_zeng
3.2 years ago by
jimmy_zeng90
University of Macau
jimmy_zeng90 wrote:

you  can just download all of the mutations recording in the files from office website :

http://www.1000genomes.org/data

ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/

then you can write a simple script to do the batch search according to the positions .

ADD COMMENTlink written 3.2 years ago by jimmy_zeng90
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