How can I download from the 1000 genome information for a list of SNPs in specific populations?
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6.0 years ago
Simo ▴ 40

Hi All,

I have a list of rs codes and positions from a Microarray and I need to get the same positions in different populations from the 1000 genome.

I tried with the 1000 genome Browser, but I should give a range for each chromosome and they are too big.

How can I do it in a different way?

Thank you

1000genome Microarray SNPs • 1.7k views
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5.6 years ago
jimmy_zeng ▴ 90

you  can just download all of the mutations recording in the files from office website :

http://www.1000genomes.org/data

ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/

then you can write a simple script to do the batch search according to the positions .

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