Question

To Calculate The Energy From Secondary Structure Dot Bracket Notation Of Rna

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12.3 years ago

Angel ▴ 90

Hi Biostar!

I have the secondary structure of RNA in dot bracket notation. so, now with the same dot bracket notation I need to calculate the energy. Could anyone suggest me a tool or server or an algorithm to calculate the free energy from dot bracket notation of RNA?

Thanks in advance

rna secondary • 3.3k views

ADD COMMENT • link updated 23 months ago by Ram 43k • written 12.3 years ago by Angel ▴ 90

score 2 · Answer 1 · 2012-01-18

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12.3 years ago

Alastair Kerr 5.3k

RNAeval from the Vienna Tools Package will do this for you.

ADD COMMENT • link 12.3 years ago by Alastair Kerr 5.3k

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but i think the server doesn't work.

ADD REPLY • link 12.3 years ago by Angel ▴ 90

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Looks like the site was getting a revamp as version 2 is now out. (Site is working as of 22/1/12)

ADD REPLY • link 12.3 years ago by Alastair Kerr 5.3k