Question: Tips on creating trees with protein phylogenetetic distribution data
0
gravatar for anioannides6
3.5 years ago by
anioannides610
Cyprus
anioannides610 wrote:

I have a table representing the presence/absence of proteins in different phyla and I've used MeV to create a binary heatmap where in X axis are all phyla and Y axis the proteins. My table has the following format:


                   Phylum 1     Phylum 2       Phylum 3
Protein 1          1                  1                    1
Protein 2          0                  0                    1 
Protein 3          1                  1                    1

Is there a way through MeV to manually reorder the X axis (phyla) by specifying an evolutionary-wise order and create a dendrogram based on that order? Is there any other software that can do the same analysis (heatmap and tree)?

Thank you!

 

ADD COMMENTlink modified 3.4 years ago by Biostar ♦♦ 20 • written 3.5 years ago by anioannides610
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1097 users visited in the last hour