Question: Tips on creating trees with protein phylogenetetic distribution data
gravatar for anioannides6
3.5 years ago by
anioannides610 wrote:

I have a table representing the presence/absence of proteins in different phyla and I've used MeV to create a binary heatmap where in X axis are all phyla and Y axis the proteins. My table has the following format:

                   Phylum 1     Phylum 2       Phylum 3
Protein 1          1                  1                    1
Protein 2          0                  0                    1 
Protein 3          1                  1                    1

Is there a way through MeV to manually reorder the X axis (phyla) by specifying an evolutionary-wise order and create a dendrogram based on that order? Is there any other software that can do the same analysis (heatmap and tree)?

Thank you!


ADD COMMENTlink modified 3.4 years ago by Biostar ♦♦ 20 • written 3.5 years ago by anioannides610
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