Question: Clustering similiar GO terms
0
gravatar for Amk
3.5 years ago by
Amk120
Amk120 wrote:

Hi Friends,

I just wanted to cluster the GO terms which has been generated from the GO annotation of one species. I tried with ReviGO for the purpose. I pasted all the GO terms removing duplicates. Can I give "Higher is better" in advanced options to cluster the GO terms, as I don't have any P-values associated with the GO terms. I generated the graphs properly, but I am afraid if it is right or not. Any one used ReviGO before kindly help.

Thank you,
Amk

go cluster revigo • 1.0k views
ADD COMMENTlink modified 6 months ago by Biostar ♦♦ 20 • written 3.5 years ago by Amk120
2
gravatar for Tej Sowpati
3.5 years ago by
Tej Sowpati250
India
Tej Sowpati250 wrote:

You can may be try this: Before removing the duplicates, you keep a count of each GO term, and use it as the second column. Then run REVIGO with "Higher is better" option.

ADD COMMENTlink written 3.5 years ago by Tej Sowpati250

Dear crackerjack,

Thank you. That make sense. Will do that!

ADD REPLYlink written 3.5 years ago by Amk120
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