Data integration - STRINGdb graph -

Question

[schmilblik]

Hello stars,

I'm trying to perform some data integration analysis:

We chose an organism (x) , and having different sets of:

Uniprot key-words (and the related genes ) :: gene1-gene2-gene3...... = subset 1

Same thing for GeneOntology , KEGG and BIOCYC ,PUBMED ..

How can I see if the proteins ( relative to the subset 1 are linked in the STRINGdb graphe .?) and what statistical tool should I use?

Thanks in advance

Answer 1

[Jean-Karim Heriche]

Filter the STRING graph for interactions involving genes in your subset. Also, have a look at the dnet R package.

...what statistical tool should I use?

To answer which question?