Question: oma stack size error
0
gravatar for jasonshiller
2.0 years ago by
Australia
jasonshiller0 wrote:

Hi, Trying to run OMA on our cluster but I get the following error.

/home/jsb7/bin/OMA/bin/../OMA.1.0.3/bin/omadarwin: line 18: ulimit: stack size: cannot modify limit: Operation not permitted
/home/jsb7/bin/OMA/bin/OMA: line 152: 18017 Segmentation fault      (core dumped) $OMA_PATH/bin/omadarwin ${darwin_flag}  <<EOF
        ${OneMachineParallelInfo}
        $drw_cmds
        done;
EOF
 

Many thanks

ortholog oma • 657 views
ADD COMMENTlink modified 2.0 years ago by adrian.altenhoff340 • written 2.0 years ago by jasonshiller0
0
gravatar for adrian.altenhoff
2.0 years ago by
Switzerland
adrian.altenhoff340 wrote:

Hi,

OMA needs to increase the default stacksize in order to be able to run. This seems not to be permitted on your system. What type of cluster are you using, especially what operating system is it running? You might need to check with your cluster admin how to enable larger stacksizes. 

Adrian

 

ADD COMMENTlink written 2.0 years ago by adrian.altenhoff340
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