Question: TCGA Data available from Server on IGV (Integrative Genomics Viewer)
gravatar for fk566938
5.2 years ago by
United States
fk56693810 wrote:

Hello, I have some questions about the server data available from IGV

There is a server for data from TCGA. When I uploaded files from there, it comes as a heatmap visualization. I am not sure what kind of data this is. I would like to also plug in coordinates for a gene isoform and find expression levels in various cancer tissues. The labeling is also unclear, for instance I am not sure what "OV - TR" OR "OV - TP" means. I realize that data from TCGA is clinical and that there are cohorts and studies on multiple patients, it makes it difficult for me to understand how to utilize the information. I was wondering if anyone knew if there was maybe RNAseq of cancer tissues on this server?

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