Question: Oligo rma cel files
0
gravatar for rufinablaise
3.8 years ago by
United States
rufinablaise0 wrote:

Hai,

I was using ReadAffy() to read cdfname="hugene10stv1" and it worked good. But now it asked to use Oligo. But I tried and its not reading in correct format. Please help me.

celFiles <- list.celfiles()
 raw.data <- read.celfiles(verbose=TRUE, filenames=celFiles, cdfname="pd.hugene.1.0.st.v1")
data.rma.norm=rma(raw.data)

rma.exprs=exprs(data.rma.norm)

write.exprs(rma.exprs, file="Susp_Norm.txt")

Thank you

 

sequencing rna-seq R • 1.8k views
ADD COMMENTlink modified 3.8 years ago • written 3.8 years ago by rufinablaise0

Sorry found out the wrong. I wasn't adding the celFiles while reading so it was reading other files too..

ADD REPLYlink written 3.8 years ago by rufinablaise0
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