Question: Plotting RPKMS per chromosome
0
gravatar for Ron
4.6 years ago by
Ron990
United States
Ron990 wrote:

Hi,

I have plotted RPKM values per chromosome in R (scatter plot of positions),however I want to plot chromosomes in the cytogenetic context such as given here:

http://www.ncbi.nlm.nih.gov/genome/tools/gdp/

I want to look at a specific chromosome and plot it while looking at the distribution of RPKMS of all genes in a chromosome.Any suggestions?

Thanks in advance,

Ron

rna-seq R • 1.4k views
ADD COMMENTlink modified 4.6 years ago by mkulecka310 • written 4.6 years ago by Ron990
0
gravatar for mkulecka
4.6 years ago by
mkulecka310
European Union
mkulecka310 wrote:

I think Gviz is ideal for this.

ADD COMMENTlink modified 7 months ago by RamRS27k • written 4.6 years ago by mkulecka310
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