Question: Plotting RPKMS per chromosome
0
gravatar for Ron
3.7 years ago by
Ron970
United States
Ron970 wrote:

Hi,

I have plotted RPKM values per chromosome in R (scatter plot of positions),however I want to plot chromosomes in the cytogenetic context such as given here:

http://www.ncbi.nlm.nih.gov/genome/tools/gdp/

I want to look at a specific chromosome and plot it while looking at the distribution of RPKMS of all genes in a chromosome.Any suggestions?

Thanks in advance,

Ron

rna-seq R • 1.2k views
ADD COMMENTlink modified 3.7 years ago by mkulecka300 • written 3.7 years ago by Ron970
0
gravatar for mkulecka
3.7 years ago by
mkulecka300
European Union
mkulecka300 wrote:

I think Gviz is ideal for this: https://bioconductor.org/packages/release/bioc/html/Gviz.html

ADD COMMENTlink written 3.7 years ago by mkulecka300
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