Question: PennCNV run error (Can't exec Linux
gravatar for gaiusjaugustus
4.6 years ago by
United States
gaiusjaugustus170 wrote:

I am trying to get PennCNV working on my computing server.  Here's what I've done, per this document:

  • Downloaded + decompressed
  • loaded perl (5.14.2) & R/2.15.2 modules
  • went to kext folder and used make
  • went to penncnv folder and typed "perl ./".  The usage information appears
  • added to my export PATH = statement in my bashrc file, "$HOME/opt/penncnv" where the files are located

I then went to the example folder to try to run those, using this document as a guide:

  • Ran "perl", got usage information
  • Ran "perl 1", and got "Can't exec (null) at example/ line 81"
  • Ran "perl -path_detect_cnv ../", same error occurs.
  • Also tried going up to the main penncnv folder and using "perl example/ 1 -path_detect_cnv", but get the same error.

Any suggestions/advice?

Thanks in advance,


linux cnv penncnv • 1.8k views
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