Question: Simulating single end reads with dwgsim
0
gravatar for kautilya
5.2 years ago by
kautilya410
United States
kautilya410 wrote:

I am using dwgsim to simulate ion torrent reads. It seems the reads coming from an ion torrent machine are single end. However looking at the commandline options for dwgsim I am unable to see one for generating single end reads. Does anybody know of a way to do this?

dwgsim simulation ngs • 1.6k views
ADD COMMENTlink modified 5.2 years ago by marina.v.yurieva550 • written 5.2 years ago by kautilya410
0
gravatar for marina.v.yurieva
5.2 years ago by
Farmington, CT
marina.v.yurieva550 wrote:

Looks like single end is default: -S 0

https://github.com/nh13/DWGSIM/wiki/Simulating-Reads-with-DWGSIM

ADD COMMENTlink modified 14 months ago by Ram32k • written 5.2 years ago by marina.v.yurieva550

I tried the default i.e. -S 0 with -c 2 (for iontorrent) but it still gives me paired end output.

ADD REPLYlink modified 14 months ago by Ram32k • written 5.2 years ago by kautilya410
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