Question: Can a locally created database be used instead of NR in I-TASSER?
gravatar for Neha shri
3.7 years ago by
Neha shri30
United States
Neha shri30 wrote:

Dear all,

                 I have generated a database of protein sequences and selected a few sequences from it based on some criteria. Now i would like to model these selected sequences and see if they folded into the native structure of a protein. The protein (native)  shares a sequence similarity of 40% with all the sequences in the database.

              As i- tasser uses NR database from pdb to generate sequence profile for the target sequence,will it be theoretically correct to use a locally created database of proteins instead of NR database.

Hope i am able to make myself clear. Please ask for more clarity if required and suggest if the idea is feasible or not. Thank you

ADD COMMENTlink modified 3.7 years ago • written 3.7 years ago by Neha shri30
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2185 users visited in the last hour