Question: Method to identify novel transcript based on strand-specific RNAseq
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gravatar for biolab
3.8 years ago by
biolab1.1k
biolab1.1k wrote:

Dear all,

I have strand specific RNAseq data at hand, and aim to get novel transcripts being different from annotations.  Apart from Cufflinks, is there any other tools to accomplish this job?  Someone suggests me to use Trinity, but I think it's a de novo assembling tool.  My data is based on a reference genome.

I appreciate any of your advice. THANKS.

cufflinks • 1.2k views
ADD COMMENTlink modified 3.8 years ago by vivekbhr530 • written 3.8 years ago by biolab1.1k
1
gravatar for vivekbhr
3.8 years ago by
vivekbhr530
Germany
vivekbhr530 wrote:

You can try Stringtie as a replacement for cufflinks..

ADD COMMENTlink written 3.8 years ago by vivekbhr530

Hi, Vivek, Thank you very much. I am going to take a try.

ADD REPLYlink written 3.8 years ago by biolab1.1k
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