From taxonomy ID to GI and ACC
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8.3 years ago

Is it possible to acquire the GI and ACC of a complete genome sequence only with the taxonomy id?

I am trying to do this with the Biopython package by using the Entrey.search and Entrez.fetch, but with no success.

genome • 1.4k views
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Entering edit mode
8.3 years ago
5heikki 11k
epost -db taxonomy -id 666 | elink -target nuccore | efetch -format uid | head
972808000
970698566
970698537
970597781
930076457
930076455
930076453
930076451
930076449
930076447

-format acc for accession

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