Question: Annotate Plink files with NCBI Human Reference Build 38 Fasta File
gravatar for laurenleesc
4.5 years ago by
laurenleesc0 wrote:



I would like to ultimately create my own set-file to use with Plink to annotate some GWAS data that I have.  I don't even know where to begin, what program to use.  I have an annotation file from the NCBI, a .fa file.  I have a GWAS file in bed/bim/fam binary format.  Ultimately I want to make a set file for PLINK set-based tests. Any ideas?  Thank you!

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