Entering edit mode
9.3 years ago
dirranrak
▴
20
Hi all,
- I am working on a new dataset and test the relatedness of all individuals by using
--genome
flag in plink. Why in the result, all RT (relationships) are UNRELATED and the EZ (IBD sharing expected value) are Non Applicable (NA)? even Z0/Z1 plot show the real case. - How exactly we can know the best threshold for the filter that we are going to use with the data?
Thank you