Question: Relationships and IBD sharing expected value in plink
gravatar for dirranrak
3.5 years ago by
United States
dirranrak10 wrote:

Hi all,

1. I am working on a new dataset and test the relatedness of all individuals by using --genome flag in plink. Why in the result, all RT (relationships) are UNRELATED and the EZ (IBD sharing expected value) are Non Applicable (NA)? even Z0/Z1 plot show the real case.

2. How exactly we can know the best threshold for the filter that we are going to use with the data? 

Thank you  

snp software error genome • 1.5k views
ADD COMMENTlink modified 3.4 years ago by Biostar ♦♦ 20 • written 3.5 years ago by dirranrak10
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