Question: Illumina small RNAseq analysis pipeline?
0
gravatar for Mamta
4.4 years ago by
Mamta450
United States
Mamta450 wrote:

Hello Bioinformaticians,

Iam under pressure to meet a deadline and hence have very limited time to work out a pipeline on my own. This is my first miRNA sequence analysis and so was looking if someone already has a published/updated pipeline for Illumina small rnaseq data. This would really really help me. This is the first analysis (so simple regular miRNA analysis is OK) and I can work on digging deeper later.

Please help if you know/have any.

Thanks!!!!!

Mamta

ADD COMMENTlink written 4.4 years ago by Mamta450
0
gravatar for Daniel Swan
4.4 years ago by
Daniel Swan13k
Aberdeen, UK
Daniel Swan13k wrote:

What organism? If it's mouse or human, you might as well launch a BaseSpace app: http://www.illumina.com/content/illumina-marketing/amr/en_US/informatics/research/sequencing-data-analysis-management/basespace/basespace-apps/mirnas-analysis-1001000.html - I think this is still free for the time being. If not, then the app workflow might give you some ideas of how to approach this.

You might also be interested in the UEA small RNASeq workbench: http://srna-workbench.cmp.uea.ac.uk/

ADD COMMENTlink modified 4.4 years ago • written 4.4 years ago by Daniel Swan13k
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