Question: Bambus2 .Mate File
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gravatar for Rahul Sharma
7.1 years ago by
Rahul Sharma560
Germany and India
Rahul Sharma560 wrote:

Dear all, I have merged two velvet assemblies using minimus2 and now I have .contig and .bnk/ files, I want to do scaffolding of these generated contigs using goBambus2. As goBambus2 requires .mate file, How can I generate this file? I did my assemblies from Illumina paired-end reads. Is this .mate file refer to that pair information? I read many forums but did not get any solution. Can anybody please suggest me how can I proceed further? Best regards, Rahul

scaffolding • 1.8k views
ADD COMMENTlink modified 3.1 years ago by Biostar ♦♦ 20 • written 7.1 years ago by Rahul Sharma560
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