Question: hmmpgmd interface to extract domain matches
0
gravatar for Sergej Andrejev
21 months ago by
Sergej Andrejev60 wrote:

I'm trying to write a script which would use hmmpgmd to predict homology to query protein sequence. There is an example on how to do this mentioned in documentation for hmmpgmd (https://github.com/Janelia-Farm-Xfam/Bio-HMM-Logo/blob/master/src/src/hmmpgmd_client_example.pl). However this example doesn't have clear comments and returned data fields are not properly described (almost always limeted to just a cryptic name). 

So I'm writing here so that maybe there is a person who has experience using hmmpgmd, and more particularly experience reading matched alignment positions from hmmpgmd binary output.

hmmer • 404 views
ADD COMMENTlink written 21 months ago by Sergej Andrejev60
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