Question: Problem with logistic regression in Plink
gravatar for C-man
4.9 years ago by
C-man10 wrote:



I have extracted snps from imputed bfile (plink) and I would like to run logistic with several diseases as a outcome.

Actually, raw file was an output for extract option. I changed it to bim, fam, bed and also tried map/ped

But, Odd ratios and p-value don't make any sense.

Here's my code for logistic. I have been trying several way

--bfile data --logistic --ci 0.95 --adjust --covar cova.txt --hide-covar --pheno outcomes.txt --missing-phenotype -999 --all-pheno --out

However, this code below did work well and i got p-value, but still I didn't know what does it mean because I do not know where is an outcome (disease)

--bfile data --logistic --ci 0.95 --adjust --covar cova.txt --hide-covar --out


Any thoughts on this?




logistic snp plink gene • 1.9k views
ADD COMMENTlink written 4.9 years ago by C-man10
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2211 users visited in the last hour