Linkage analysis with whole -exome sequencing data
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5.8 years ago
wanabi ▴ 60

Which software do you recommend to perform classic linkage on whole exome sequencing data?

 

Thanks

whole exome sequencing linkage • 1.8k views
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I am getting this everytime I am trying to run my PLINK data. Can anyone help me with this problem?

ERROR: No file [ mydata.ped ] exists.
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ERROR: Problem with compound genotype [ A ] should be two characters long
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5.8 years ago

Plink

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Thanks for your reply. However, I dont think you can do classical two-point or multi-point linkage analysis with PLINK or PLINK1.9

Thanks

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Another one I came across recently is SEQLinkage

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