Question: Linkage analysis with whole -exome sequencing data
1
gravatar for wanabi
3.2 years ago by
wanabi60
Germany
wanabi60 wrote:

Which software do you recommend to perform classic linkage on whole exome sequencing data?

 

Thanks

ADD COMMENTlink modified 7 months ago by nudrylab0 • written 3.2 years ago by wanabi60

I am getting this everytime I am trying to run my PLINK data. Can anyone help me with this problem?

ERROR: No file [ mydata.ped ] exists.
ADD REPLYlink modified 6 months ago by RamRS21k • written 7 months ago by nudrylab0
ERROR: Problem with compound genotype [ A ] should be two characters long
ADD REPLYlink modified 6 months ago by RamRS21k • written 7 months ago by nudrylab0
1
gravatar for andrew.j.skelton73
3.2 years ago by
London
andrew.j.skelton735.6k wrote:

Plink

ADD COMMENTlink modified 6 months ago by RamRS21k • written 3.2 years ago by andrew.j.skelton735.6k
1

Thanks for your reply. However, I dont think you can do classical two-point or multi-point linkage analysis with PLINK or PLINK1.9

Thanks

ADD REPLYlink modified 6 months ago by RamRS21k • written 3.2 years ago by wanabi60

Another one I came across recently is SEQLinkage

ADD REPLYlink written 11 months ago by andrew.j.skelton735.6k
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