Which software do you recommend to perform classic linkage on whole exome sequencing data?
I am getting this everytime I am trying to run my PLINK data. Can anyone help me with this problem?
ERROR: No file [ mydata.ped ] exists.
ERROR: Problem with compound genotype [ A ] should be two characters long
Thanks for your reply. However, I dont think you can do classical two-point or multi-point linkage analysis with PLINK or PLINK1.9
Another one I came across recently is SEQLinkage