Question: TUTORIALS about Hi-C data analysis
2
gravatar for shiningstarbzu
2.6 years ago by
shiningstarbzu20 wrote:

Can anybody guide me to find “TUTORIALS” about Hi-C data analysis so that I may be able to analyze Hi-C data independently? Thanks

genome • 2.2k views
ADD COMMENTlink modified 3 days ago by Adeel0 • written 2.6 years ago by shiningstarbzu20

HiFive : http://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0806-y Its an open source tool.

ADD REPLYlink written 2.6 years ago by ####170

sorry for the delayed reply, yes @Dogancan I have Raw data (.fastq).

ADD REPLYlink modified 3 days ago • written 3 days ago by Adeel0
2
gravatar for Czh3
2.6 years ago by
Czh3190
China
Czh3190 wrote:

homer hicup

ADD COMMENTlink written 2.6 years ago by Czh3190
2
gravatar for Dogancan
6 months ago by
Dogancan30
Dogancan30 wrote:

HiC-Pro documentation is pretty thorough.

ADD COMMENTlink written 6 months ago by Dogancan30

@Dogancan hope you will be good, thanks for mentioning HiC-Pro for Hic data analysis. i am trying this pipeline, but i could not get enough understanding how to start it because i am quite new to computational genomics ! Can you please share some comprehensive notes or step by step list of commands? Yeah , i have gone through its manual, i have data from Arabidopsis, i don't know how to incorporate my data into it. Thank you.

ADD REPLYlink written 3 months ago by Adeel0

Do you have your raw reads (fastq)?

ADD REPLYlink written 8 weeks ago by Dogancan30
1
gravatar for Fidel
21 months ago by
Fidel1.8k
Germany
Fidel1.8k wrote:

You can use HiCExplorer, here is a tutorial: http://hicexplorer.readthedocs.io/en/latest/content/example_usage.html

ADD COMMENTlink written 21 months ago by Fidel1.8k
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