Question: TUTORIALS about Hi-C data analysis
2
gravatar for shiningstarbzu
2.8 years ago by
shiningstarbzu20 wrote:

Can anybody guide me to find “TUTORIALS” about Hi-C data analysis so that I may be able to analyze Hi-C data independently? Thanks

genome • 2.5k views
ADD COMMENTlink modified 9 weeks ago by Adeel0 • written 2.8 years ago by shiningstarbzu20

HiFive : http://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0806-y Its an open source tool.

ADD REPLYlink written 2.8 years ago by ####170

sorry for the delayed reply, yes @Dogancan I have Raw data (.fastq).

ADD REPLYlink modified 9 weeks ago • written 9 weeks ago by Adeel0
2
gravatar for Czh3
2.8 years ago by
Czh3190
China
Czh3190 wrote:

homer hicup

ADD COMMENTlink written 2.8 years ago by Czh3190
2
gravatar for Dogancan
8 months ago by
Dogancan30
Dogancan30 wrote:

HiC-Pro documentation is pretty thorough.

ADD COMMENTlink written 8 months ago by Dogancan30

@Dogancan hope you will be good, thanks for mentioning HiC-Pro for Hic data analysis. i am trying this pipeline, but i could not get enough understanding how to start it because i am quite new to computational genomics ! Can you please share some comprehensive notes or step by step list of commands? Yeah , i have gone through its manual, i have data from Arabidopsis, i don't know how to incorporate my data into it. Thank you.

ADD REPLYlink written 5 months ago by Adeel0

Do you have your raw reads (fastq)?

ADD REPLYlink written 4 months ago by Dogancan30
1
gravatar for Fidel
23 months ago by
Fidel1.8k
Germany
Fidel1.8k wrote:

You can use HiCExplorer, here is a tutorial: http://hicexplorer.readthedocs.io/en/latest/content/example_usage.html

ADD COMMENTlink written 23 months ago by Fidel1.8k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1695 users visited in the last hour