Can anybody guide me to find “TUTORIALS” about Hi-C data analysis so that I may be able to analyze Hi-C data independently? Thanks
HiFive : http://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0806-y
Its an open source tool.
sorry for the delayed reply,
yes @Dogancan I have Raw data (.fastq).
HiC-Pro documentation is pretty thorough.
@Dogancan hope you will be good, thanks for mentioning HiC-Pro for Hic data analysis. i am trying this pipeline, but i could not get enough understanding how to start it because i am quite new to computational genomics ! Can you please share some comprehensive notes or step by step list of commands?
Yeah , i have gone through its manual, i have data from Arabidopsis, i don't know how to incorporate my data into it.
Do you have your raw reads (fastq)?
You can use HiCExplorer, here is a tutorial: http://hicexplorer.readthedocs.io/en/latest/content/example_usage.html