Dear all, Am using Panseq tool for pangenome analysis on my ubuntu 14.04. Initially the program was running good but at some point it's not running and showing errors like this repeatedly. help me out to get results, Thanks in advance.
Error: WARN | CombineFilesIntoSingleFile.pm:82> Skipping /home/kathirvel/Documents/Panseq/result/1b262d692f0260ef68d106108db0dc3b_e4b2d03c8910a890751880b5c0893130_NR as it has size of 0
And here the Configuration file :
queryDirectory /home/Panseq/check/query
referenceDirectory /home/Panseq/check/reference
baseDirectory /home/Panseq/check/result
numberOfCores 10
mummerDirectory /home/Downloads/MUMmer3.23
blastDirectory /home/Downloads/ncbi-blast-2.2.29+/bin
minimumNovelRegionSize 500
novelRegionFinderMode no_duplicates
muscleExecutable /usr/bin/muscle3.8.31_i86linux64
fragmentationSize 500
percentIdentityCutoff 90
coreGenomeThreshold 2
runMode pan
